WGA of Escherichia coli O157:H7: comparison of multiple isolates - SRA

SRX3923223: WGA of Escherichia coli O157:H7: comparison of multiple isolates
1 PACBIO_SMRT (PacBio RS II) run: 128,088 spots, 1.5G bases, 980.4Mb downloads

Design: DNA extracted using 100/G columns (Qiagen), sheared using a Corvaris g-tube, and libraries made using the PacBio SMRTbell Template Prep kit 1.0. The libraries are size selected to 15 kb using the BluePippin and loaded onto a PacBio RS II.

Submitted by: United State Department of Agriculture

Study: Comparison of related Escherichia coli O157:H7 strains

PRJNA445267 • SRP136990 • All experiments • All runs

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The aim of this project is to compare complete closed genomes with whole genome sequencing (WGS) using short reads. SNPs from WGS is used in many studies to determine relatedness of strains. These SNPs are in the core genome and don't reflect the diversity of the complete genome. This study provides insight into how core SNPs relates to the structure and sequence of the complete genome.

Sample:

SAMN08773024 • SRS3115801 • All experiments • All runs

Organism: Escherichia coli

Library:

Name: USMARCTA112

Instrument: PacBio RS II

Strategy: WGA

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 128,088 spots, 1.5G bases, 980.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR6982926	128,088	1.5G	980.4Mb	2019-05-01

ID:: 5381873

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